Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDO1Cysteine dioxygenase. (236 aa)    
Predicted Functional Partners:
cgl
Cystathionine gamma-lyase.
     
 0.979
CG024
CG024 protein precursor.
    
  0.938
suox
Sulfite oxidase, mitochondrial isoform X2.
      
 0.937
LOC106569246
Glutamate decarboxylase 1-like isoform X1.
     
 0.935
gad2
Glutamate decarboxylase 2.
     
 0.935
LOC106612605
Glutamate--cysteine ligase catalytic subunit-like isoform X2.
     
 0.931
gsh1
Glutamate--cysteine ligase catalytic subunit isoform X1.
     
 0.931
surf6
Kynurenine--oxoglutarate transaminase 1-like isoform X1.
     
 0.926
kat3
Kynurenine--oxoglutarate transaminase 3 isoform X1.
     
 0.926
ENSSSAP00000109123
Cysteine sulfinic acid decarboxylase.
     
 0.922
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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