STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106605479C-C chemokine receptor type 5-like; Belongs to the G-protein coupled receptor 1 family. (356 aa)    
Predicted Functional Partners:
LOC106580715
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
   
 0.909
ENSSSAP00000045416
annotation not available
   
 0.895
ENSSSAP00000048897
annotation not available
   
 0.895
groa
Growth-regulated alpha protein precursor.
   
 0.886
ENSSSAP00000053417
annotation not available
   
 0.886
LOC106589772
Stromal cell-derived factor 1-like; Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.875
SDF1
Stromal cell-derived factor 1 precursor; Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.875
LOC106604225
Stromal cell-derived factor 1-like; Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.875
cxcl12
C-X-C motif chemokine ligand 12.
    
 0.875
CCL19
C-C motif chemokine.
    
 0.865
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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