Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106603328Bromodomain and WD repeat-containing protein 3-like isoform X1. (1773 aa)    
Predicted Functional Partners:
LOC106561926
DNA damage-binding protein 1-like isoform X1.
    
 
 0.804
ddb1
Salmo salar DNA damage-binding protein 1 (ddb1), mRNA.
    
 
 0.804
LOC106599567
UBX domain-containing protein 7-like isoform X1.
   
 0.744
LOC106568865
UBX domain-containing protein 7-like.
   
 0.744
mysm1
Histone H2A deubiquitinase MYSM1.
   
 0.739
LOC106613979
Histone H2A deubiquitinase MYSM1-like.
   
 0.739
psmg2
Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.
     
 0.735
ofd1
Oral-facial-digital syndrome 1 protein.
    
 
 0.688
LOC106590075
Transcription activator BRG1-like isoform X4.
   
 0.656
ENSSSAP00000017940
annotation not available
   
 0.656
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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