STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106564444Protein DGCR14-like. (517 aa)    
Predicted Functional Partners:
fra10ac1
Protein FRA10AC1.
    
 
 0.915
LOC106591093
G patch domain-containing protein 1-like.
    
 
 0.910
LOC106571265
Crooked neck-like protein 1.
    
 
 0.890
LOC106607683
Crooked neck-like protein 1.
    
 
 0.890
bud31
Protein BUD31 homolog.
    
 
 0.880
LOC106595689
Protein BUD31 homolog.
    
 
 0.880
LOC106604197
pre-mRNA-splicing factor SLU7-like.
    
 
 0.876
LOC106607544
pre-mRNA-splicing factor SYF1-like.
    
 
 0.869
syf1
Salmo salar Pre-mRNA-splicing factor SYF1 (syf1), mRNA.
    
 
 0.869
sde2
C1orf55 homolog.
    
 
 0.853
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.