STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106564444Protein DGCR14-like. (517 aa)    
Predicted Functional Partners:
fra10ac1
Protein FRA10AC1.
    
 
 0.676
LOC106607544
pre-mRNA-splicing factor SYF1-like.
   
 
 0.607
LOC106590901
Protein phosphatase 1F-like.
   
  
 0.607
syf1
Salmo salar Pre-mRNA-splicing factor SYF1 (syf1), mRNA.
   
 
 0.607
LOC106580466
tRNA (Uracil-5-)-methyltransferase homolog A-like; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
  
 0.589
wdr70
WD repeat-containing protein 70.
      
 0.581
mrpl40
39S ribosomal protein L40, mitochondrial isoform X1.
   
  
 0.581
LOC106604197
pre-mRNA-splicing factor SLU7-like.
      
 0.578
LOC106609896
pre-mRNA-processing factor 19.
    
 
 0.552
LOC106611702
pre-mRNA-processing factor 19-like.
    
 
 0.552
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.