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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hnf1aHepatocyte nuclear factor 1-alpha; Transcriptional activator that regulates the tissue specific expression of multiple genes, especially in pancreas and liver (By similarity). Binds to the promoter of the albumin gene; Belongs to the HNF1 homeobox family. (560 aa)    
Predicted Functional Partners:
phs
Pterin-4-alpha-carbinolamine dehydratase.
   
 
 0.865
LOC106576922
Pterin-4-alpha-carbinolamine dehydratase-like.
    
 
 0.862
LOC106612790
Hepatocyte nuclear factor 1-beta-A-like isoform X1.
  
 
0.758
LOC106581182
Hepatocyte nuclear factor 1-beta-A-like isoform X1.
  
 
0.757
LOC106580073
Osteoclast-stimulating factor 1.
    
 
 0.628
ostf1
Osteoclast-stimulating factor 1.
    
 
 0.628
LOC106612699
Forkhead box protein A2-like.
   
 
 0.618
fkh
Fork head domain protein isoform X1.
   
 
 0.618
LOC106590549
Hepatocyte nuclear factor 4-gamma-like isoform X2.
   
 0.616
ciz1
Cip1-interacting zinc finger protein.
    
 
 0.609
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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