Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106573931Adenomatous polyposis coli protein 2-like. (2495 aa)    
Predicted Functional Partners:
ctnnb1
Catenin beta-1.
   
 0.989
AXIN2
Axin-2-like.
   
 0.969
AXIN2-2
Axin-2-like.
   
 0.969
ENSSSAP00000017717
annotation not available
   
 0.936
LOC106606676
Axin-2-like.
   
 0.936
GSK3B-2
Glycogen synthase kinase-3 beta isoform X1; Belongs to the protein kinase superfamily.
    
 0.935
GSK3B-3
Glycogen synthase kinase-3 beta-like isoform X4; Belongs to the protein kinase superfamily.
    
 0.935
LOC106600820
Junction plakoglobin-like isoform X1.
   
 0.926
LOC106564751
Junction plakoglobin-like.
   
 0.926
plak
Junction plakoglobin isoform X1.
   
 0.926
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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