LOC106608843 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106608843

Uncharacterized protein LOC106608843. (239 aa)

Predicted Functional Partners:

LOC100194654

0.978

LOC106577118

0.978

ube2l3

0.977

LOC106562992

0.975

ENSSSAP00000019398

0.951

LOC106599031

0.951

ENSSSAP00000071551

0.951

LOC100136537

0.951

LOC100194659

0.951

LOC106599031-2

0.951

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000019398	LOC100194654	ENSSSAP00000019398	ENSSSAP00000060002	annotation not available	Salmo salar ribosomal protein S27-3 (LOC100194654), mRNA.	0.987
ENSSSAP00000019398	LOC100194659	ENSSSAP00000019398	ENSSSAP00000098259	annotation not available	Salmo salar ubiquitin A-52 residue ribosomal protein fusion product 1like 2 (LOC100194659), mRNA.	0.507
ENSSSAP00000019398	LOC106562992	ENSSSAP00000019398	ENSSSAP00000031692	annotation not available	polyubiquitin-B.	0.995
ENSSSAP00000019398	LOC106577118	ENSSSAP00000019398	ENSSSAP00000101545	annotation not available	ubiquitin-40S ribosomal protein S27a.	0.996
ENSSSAP00000019398	LOC106599031	ENSSSAP00000019398	ENSSSAP00000049671	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1like 2.	0.507
ENSSSAP00000019398	LOC106599031-2	ENSSSAP00000019398	ENSSSAP00000109613	annotation not available	ubiquitin-60S ribosomal protein L40-like.	0.507
ENSSSAP00000019398	LOC106608843	ENSSSAP00000019398	ENSSSAP00000012533	annotation not available	Uncharacterized protein LOC106608843.	0.951
ENSSSAP00000019398	ube2l3	ENSSSAP00000019398	ENSSSAP00000092838	annotation not available	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	0.959
ENSSSAP00000071551	LOC100194654	ENSSSAP00000071551	ENSSSAP00000060002	annotation not available	Salmo salar ribosomal protein S27-3 (LOC100194654), mRNA.	0.991
ENSSSAP00000071551	LOC100194659	ENSSSAP00000071551	ENSSSAP00000098259	annotation not available	Salmo salar ubiquitin A-52 residue ribosomal protein fusion product 1like 2 (LOC100194659), mRNA.	0.403
ENSSSAP00000071551	LOC106562992	ENSSSAP00000071551	ENSSSAP00000031692	annotation not available	polyubiquitin-B.	0.995
ENSSSAP00000071551	LOC106577118	ENSSSAP00000071551	ENSSSAP00000101545	annotation not available	ubiquitin-40S ribosomal protein S27a.	0.996
ENSSSAP00000071551	LOC106599031	ENSSSAP00000071551	ENSSSAP00000049671	annotation not available	Ubiquitin A-52 residue ribosomal protein fusion product 1like 2.	0.403
ENSSSAP00000071551	LOC106599031-2	ENSSSAP00000071551	ENSSSAP00000109613	annotation not available	ubiquitin-60S ribosomal protein L40-like.	0.403
ENSSSAP00000071551	LOC106608843	ENSSSAP00000071551	ENSSSAP00000012533	annotation not available	Uncharacterized protein LOC106608843.	0.951
ENSSSAP00000071551	ube2l3	ENSSSAP00000071551	ENSSSAP00000092838	annotation not available	Ubiquitin-conjugating enzyme E2 L3-like; Belongs to the ubiquitin-conjugating enzyme family.	0.959
LOC100136537	LOC100194654	ENSSSAP00000095823	ENSSSAP00000060002	Ubiquitin A-52 residue ribosomal protein fusion product 1like 1.	Salmo salar ribosomal protein S27-3 (LOC100194654), mRNA.	0.987
LOC100136537	LOC100194659	ENSSSAP00000095823	ENSSSAP00000098259	Ubiquitin A-52 residue ribosomal protein fusion product 1like 1.	Salmo salar ubiquitin A-52 residue ribosomal protein fusion product 1like 2 (LOC100194659), mRNA.	0.507
LOC100136537	LOC106562992	ENSSSAP00000095823	ENSSSAP00000031692	Ubiquitin A-52 residue ribosomal protein fusion product 1like 1.	polyubiquitin-B.	0.995
LOC100136537	LOC106577118	ENSSSAP00000095823	ENSSSAP00000101545	Ubiquitin A-52 residue ribosomal protein fusion product 1like 1.	ubiquitin-40S ribosomal protein S27a.	0.996