STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox10Transcription factor SOX-10. (495 aa)    
Predicted Functional Partners:
MITF
Microphthalmia-associated transcription factor-like isoform X1.
    
 
 0.827
mitf
Microphthalmia-associated transcription factor isoform X1.
    
 
 0.827
LOC106565743
Microphthalmia-associated transcription factor-like isoform X1.
    
 
 0.800
NEFL
Neurofilament light polypeptide-like; Belongs to the intermediate filament family.
   
 0.760
ASIC1
Acid-sensing ion channel 1-like; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
    
 
 0.745
nefl
Neurofilament light polypeptide isoform X1; Belongs to the intermediate filament family.
   
 0.743
trpc1
Short transient receptor potential channel 1; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.725
tyrp-1
5,6-dihydroxyindole-2-carboxylic acid oxidase isoform X1.
    
 0.706
LOC106582441
L-dopachrome tautomerase-like.
    
 0.690
GJA1
Gap junction protein alpha 1.
   
 
 0.678
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.