Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106565783Short transient receptor potential channel 4-associated protein-like isoform X2. (813 aa)    
Predicted Functional Partners:
LOC106561926
DNA damage-binding protein 1-like isoform X1.
    
 
 0.862
ddb1
Salmo salar DNA damage-binding protein 1 (ddb1), mRNA.
    
 
 0.862
dcaf4
DDB1- and CUL4-associated factor 4 isoform X1.
   
 
 0.839
LOC106560571
DET1- and DDB1-associated protein 1-like.
    
  0.808
LOC106568965
DET1- and DDB1-associated protein 1.
    
  0.808
DDA1
DET1- and DDB1-associated protein 1-like.
    
  0.808
LOC106583968
DET1- and DDB1-associated protein 1-like.
    
  0.808
CUL4B
cullin-4B-like isoform X1; Belongs to the cullin family.
    
 0.762
cul4b
cullin-4B isoform X1; Belongs to the cullin family.
    
 0.762
LOC106575785
DDB1- and CUL4-associated factor 6-like isoform X3.
    
 0.737
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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