STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106579936Calcium-binding protein 1-like isoform X1. (381 aa)    
Predicted Functional Partners:
nphp3
Nephrocystin-3 isoform X1.
    
 0.772
LOC106574738
Peripheral plasma membrane protein CASK-like.
    
 0.726
ENSSSAP00000105696
Calcium/calmodulin-dependent serine protein kinase b.
    
 0.726
cask
Peripheral plasma membrane protein CASK isoform X10; Belongs to the MAGUK family.
    
 0.726
CASK
Peripheral plasma membrane protein CASK-like isoform X11; Belongs to the MAGUK family.
    
 0.726
LOC106563294
ADP-ribosylation factor-like protein 3 isoform X1; Belongs to the small GTPase superfamily. Arf family.
   
 0.725
LOC106589841
ADP-ribosylation factor-like protein 3; Belongs to the small GTPase superfamily. Arf family.
   
 0.725
ENSSSAP00000080673
ADP ribosylation factor like GTPase 3b.
   
 0.725
wdr90
WD repeat-containing protein 90.
    
 0.665
xpc
DNA repair protein complementing XP-C cells.
    
 0.612
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.