STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc71Leucine-rich repeat-containing protein 71 isoform X1. (520 aa)    
Predicted Functional Partners:
LOC106586322
ly6/PLAUR domain-containing protein 6B-like.
   
  
 0.710
LOC106582592
Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.
    
 
 0.704
nme8
Thioredoxin domain-containing protein 3 isoform X2; Belongs to the NDK family.
    
 
 0.704
ENSSSAP00000093050
annotation not available
    
 
 0.704
tctex1d1
Tctex1 domain-containing protein 1.
   
 
 0.640
LOC106605310
Platelet endothelial aggregation receptor 1-like isoform X2.
      
 0.591
LOC106580670
Platelet endothelial aggregation receptor 1-like isoform X1.
      
 0.591
ankub1
Protein ANKUB1.
      
 0.582
wdr90
WD repeat-containing protein 90.
   
  0.559
parvg
Gamma-parvin.
   
  
 0.501
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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