STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106581608Rho GTPase-activating protein 42-like. (125 aa)    
Predicted Functional Partners:
LOC106563449
Cdc42 effector protein 2-like.
    
   0.727
ARHGAP10
Rho GTPase activating protein 10.
    
   0.681
arhgap10
Rho GTPase-activating protein 10.
    
   0.681
C2CD2
C2 domain-containing protein 2.
    
   0.632
LOC106567954
C2 domain-containing protein 2-like.
    
   0.632
LOC106567263
Cell division control protein 42 homolog isoform X2.
    
 0.596
LOC106565619
Cell division control protein 42 homolog isoform X1.
    
 0.596
LOC106572399
Cell division control protein 42 homolog isoform X1.
    
 0.596
LOC106583122
Cell division control protein 42 homolog isoform X1.
    
 0.596
SNIP1
Smad nuclear-interacting protein 1-like.
      
 0.586
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.