STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609641Protein piccolo-like. (2414 aa)    
Predicted Functional Partners:
LOC106586233
Rap guanine nucleotide exchange factor 4-like isoform X1.
    
 0.910
LOC106581759
Rap guanine nucleotide exchange factor 4-like isoform X2.
    
 0.910
LOC106565168
Protein bassoon-like isoform X1.
   
 
 0.816
LOC106583441
Protein bassoon-like isoform X1.
   
 
 0.816
UNC79
Protein unc-79 homolog.
   
 0.731
LOC106611001
Protein unc-79 homolog isoform X2.
   
 0.731
LOC106565300
ERC protein 2-like.
   
 
 0.597
LOC106583361
ERC protein 2-like.
   
 
 0.597
LOC106561322
ELKS/Rab6-interacting/CAST family member 1-like isoform X2.
   
 
 0.597
LOC106566519
ERC protein 2-like.
   
 
 0.597
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.