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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106574337A disintegrin and metalloproteinase with thrombospondin motifs 5-like. (961 aa)    
Predicted Functional Partners:
LOC106605320
Brevican core protein-like isoform X1.
     
 0.839
LOC106580754
Aggrecan core protein-like isoform X2.
     
 0.839
LOC106584646
Aggrecan core protein-like.
     
 0.630
LOC106562525
Aggrecan core protein-like.
     
 0.630
LOC100380783
Aggrecan core protein.
     
 0.630
LOC106561101
Aggrecan core protein-like isoform X1.
     
 0.630
ENSSSAP00000028710
annotation not available
     
 0.608
LOC106612440
Beta-1,3-glucosyltransferase-like isoform X3.
    
 0.601
B3GLT
Beta-1,3-glucosyltransferase precursor.
    
 0.601
LOC106586440
GDP-fucose protein O-fucosyltransferase 2-like isoform X1.
     
 0.554
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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