STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106579935Aspartate beta-hydroxylase domain-containing protein 2-like. (360 aa)    
Predicted Functional Partners:
srrd
SRR1-like protein isoform X1.
      
 0.576
hps4
Hermansky-Pudlak syndrome 4 protein.
      
 0.563
cdipt
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
      
 0.506
LOC106603469
Uncharacterized protein LOC106603469 isoform X1; Belongs to the syntaxin family.
      
 0.495
LOC106613914
acyl-CoA-binding domain-containing protein 6 isoform X2.
      
 0.461
LOC106584314
acyl-CoA-binding domain-containing protein 6-like isoform X1.
      
 0.461
LOC106612440
Beta-1,3-glucosyltransferase-like isoform X3.
      
 0.459
B3GLT
Beta-1,3-glucosyltransferase precursor.
      
 0.459
HPS6
Hermansky-Pudlak syndrome 6 protein.
      
 0.456
trmu
Mitochondrial tRNA-specific 2-thiouridylase 1.
      
 0.449
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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