STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106569364DDB1- and CUL4-associated factor 8-like. (600 aa)    
Predicted Functional Partners:
LOC106561926
DNA damage-binding protein 1-like isoform X1.
    
 0.963
ddb1
Salmo salar DNA damage-binding protein 1 (ddb1), mRNA.
    
 0.963
dcaf4
DDB1- and CUL4-associated factor 4 isoform X1.
     
 0.826
LOC106601090
DDB1- and CUL4-associated factor 5-like.
   
 
 0.774
dcaf5
DDB1- and CUL4-associated factor 5 isoform X1.
   
 
 0.774
CUL4B
cullin-4B-like isoform X1; Belongs to the cullin family.
   
 0.771
cul4b
cullin-4B isoform X1; Belongs to the cullin family.
   
 0.771
ddb2
DNA damage-binding protein 2.
    
 0.764
LOC106574804
cullin-4A-like; Belongs to the cullin family.
   
 0.762
ENSSSAP00000016601
annotation not available
   
 0.762
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.