STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSSAP00000012787tRNA methyltransferase 10C, mitochondrial RNase P subunit. (343 aa)    
Predicted Functional Partners:
HCD2
3-hydroxyacyl-CoA dehydrogenase type-2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.990
ENSSSAP00000049872
Protein only RNase P catalytic subunit.
   
 0.959
prorp
Mitochondrial ribonuclease P protein 3 isoform X1.
   
 0.959
RNZ2
Zinc phosphodiesterase ELAC protein 2.
   
 
 0.910
elac2
Zinc phosphodiesterase ELAC protein 2.
   
 
 0.910
mrps31
28S ribosomal protein S31, mitochondrial.
   
 
 0.903
GRSF1
G-rich sequence factor 1.
   
 
 0.890
mrps25
28S ribosomal protein S25, mitochondrial.
    
 
 0.875
trnt1
CCA tRNA nucleotidyltransferase 1, mitochondrial isoform X1; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
   
 
 0.862
ENSSSAP00000111456
tRNA nucleotidyl transferase, CCA-adding, 1.
   
 
 0.862
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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