STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106612678Collagen alpha-1(IX) chain-like. (599 aa)    
Predicted Functional Partners:
ENSSSAP00000074381
annotation not available
  
     0.478
tep1
Telomerase protein component 1.
    
 0.471
ENSSSAP00000002448
annotation not available
  
     0.469
LOC106560234
Collagen alpha-1(IX) chain-like.
  
     0.467
C1QC-2
Complement C1q subcomponent subunit C-like.
   
  0.467
ENSSSAP00000043175
annotation not available
  
     0.436
ENSSSAP00000058126
annotation not available
  
     0.434
LOC106582005
Collagen alpha-1(VIII) chain-like.
  
     0.428
LOC106569600
Titin-like isoform X1.
  
 
   0.418
ENSSSAP00000063285
annotation not available
  
     0.406
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.