Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
snaiSnail homolog Sna. (258 aa)    
Predicted Functional Partners:
LOC106566562
Protein snail homolog Sna-like isoform X2.
     
  0.915
LOC106566344
Interleukin-1 receptor-associated kinase 1-like isoform X1.
    
 
 0.595
LOC106566684
Interleukin-17 receptor B-like isoform X1.
      
 0.594
pink1
Serine/threonine-protein kinase PINK1, mitochondrial.
      
 0.523
LOC106608217
RNA-binding protein 25-like.
      
 0.501
LOC106571670
RNA-binding protein 25-like isoform X2.
      
 0.501
SNW1
SNW domain-containing protein 1-like.
      
 0.457
LOC106564530
Interleukin enhancer-binding factor 3-like isoform X3.
      
 0.452
ENSSSAP00000014755
annotation not available
      
 0.452
ENSSSAP00000018987
Interleukin enhancer binding factor 3a.
      
 0.452
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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