LOC100136408 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100136408

Cysteine and tyrosine-rich protein 1. (153 aa)

Predicted Functional Partners:

LOC106569210

0.524

LOC106590285

0.524

LOC106579691

0.524

LOC106596642

0.511

SLC4A11

0.511

LOC106567793

0.510

shisal1

0.485

LOC106584473

0.485

LOC106608622

0.465

LOC106611382

0.458

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100136408	LOC106567793	ENSSSAP00000012793	ENSSSAP00000072711	Cysteine and tyrosine-rich protein 1.	Protein shisa-1-like.	0.510
LOC100136408	LOC106569210	ENSSSAP00000012793	ENSSSAP00000045989	Cysteine and tyrosine-rich protein 1.	Vesicular, overexpressed in cancer, prosurvival protein 1-like isoform X1.	0.524
LOC100136408	LOC106579691	ENSSSAP00000012793	ENSSSAP00000115331	Cysteine and tyrosine-rich protein 1.	Vesicular, overexpressed in cancer, prosurvival protein 1-like isoform X1.	0.524
LOC100136408	LOC106584473	ENSSSAP00000012793	ENSSSAP00000049311	Cysteine and tyrosine-rich protein 1.	Uncharacterized protein KIAA1644 homolog.	0.485
LOC100136408	LOC106590285	ENSSSAP00000012793	ENSSSAP00000112105	Cysteine and tyrosine-rich protein 1.	Vesicular, overexpressed in cancer, prosurvival protein 1-like isoform X1.	0.524
LOC100136408	LOC106596642	ENSSSAP00000012793	ENSSSAP00000000025	Cysteine and tyrosine-rich protein 1.	Sodium bicarbonate transporter-like protein 11.	0.511
LOC100136408	LOC106608622	ENSSSAP00000012793	ENSSSAP00000070694	Cysteine and tyrosine-rich protein 1.	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	0.465
LOC100136408	LOC106611382	ENSSSAP00000012793	ENSSSAP00000006616	Cysteine and tyrosine-rich protein 1.	LOW QUALITY PROTEIN: complement component C1q receptor-like.	0.458
LOC100136408	SLC4A11	ENSSSAP00000012793	ENSSSAP00000040156	Cysteine and tyrosine-rich protein 1.	Sodium bicarbonate transporter-like protein 11 isoform X1.	0.511
LOC100136408	shisal1	ENSSSAP00000012793	ENSSSAP00000046090	Cysteine and tyrosine-rich protein 1.	Uncharacterized protein KIAA1644 homolog.	0.485
LOC106567793	LOC100136408	ENSSSAP00000072711	ENSSSAP00000012793	Protein shisa-1-like.	Cysteine and tyrosine-rich protein 1.	0.510
LOC106567793	LOC106584473	ENSSSAP00000072711	ENSSSAP00000049311	Protein shisa-1-like.	Uncharacterized protein KIAA1644 homolog.	0.595
LOC106567793	shisal1	ENSSSAP00000072711	ENSSSAP00000046090	Protein shisa-1-like.	Uncharacterized protein KIAA1644 homolog.	0.595
LOC106569210	LOC100136408	ENSSSAP00000045989	ENSSSAP00000012793	Vesicular, overexpressed in cancer, prosurvival protein 1-like isoform X1.	Cysteine and tyrosine-rich protein 1.	0.524
LOC106579691	LOC100136408	ENSSSAP00000115331	ENSSSAP00000012793	Vesicular, overexpressed in cancer, prosurvival protein 1-like isoform X1.	Cysteine and tyrosine-rich protein 1.	0.524
LOC106584473	LOC100136408	ENSSSAP00000049311	ENSSSAP00000012793	Uncharacterized protein KIAA1644 homolog.	Cysteine and tyrosine-rich protein 1.	0.485
LOC106584473	LOC106567793	ENSSSAP00000049311	ENSSSAP00000072711	Uncharacterized protein KIAA1644 homolog.	Protein shisa-1-like.	0.595
LOC106590285	LOC100136408	ENSSSAP00000112105	ENSSSAP00000012793	Vesicular, overexpressed in cancer, prosurvival protein 1-like isoform X1.	Cysteine and tyrosine-rich protein 1.	0.524
LOC106596642	LOC100136408	ENSSSAP00000000025	ENSSSAP00000012793	Sodium bicarbonate transporter-like protein 11.	Cysteine and tyrosine-rich protein 1.	0.511
LOC106608622	LOC100136408	ENSSSAP00000070694	ENSSSAP00000012793	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	Cysteine and tyrosine-rich protein 1.	0.465