STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106575045Nuclear fragile X mental retardation-interacting protein 1-like isoform X1. (601 aa)    
Predicted Functional Partners:
znhit6
Box C/D snoRNA protein 1.
   
 
 0.745
znhit3
Zinc finger HIT domain-containing protein 3.
    
 
 0.719
znhit2
Zinc finger HIT domain-containing protein 2.
    
 
 0.589
nxf1
Nuclear RNA export factor 1.
    
 
 0.578
LOC106604390
Nuclear RNA export factor 1-like isoform X1.
    
 
 0.578
LOC106603139
Nuclear RNA export factor 1-like.
    
 
 0.578
LOC106608689
Nuclear valosin-containing protein-like.
    
 
 0.572
LOC106576956
Nuclear valosin-containing protein-like.
    
 
 0.572
ENSSSAP00000014250
Nucleolar protein 10.
   
  
 0.569
nol10
Nucleolar protein 10.
   
  
 0.569
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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