PDC protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

PDC

Phosducin-like. (257 aa)

Predicted Functional Partners:

cct7

0.953

tcp1

0.916

LOC106590610

0.911

tcpe

0.911

GNB4

0.878

LOC106567879

0.878

LOC106565997

0.878

LOC100380691

0.878

LOC106571997

0.878

LOC106582769

0.878

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNB4	LOC106590610	ENSSSAP00000005848	ENSSSAP00000075204	Guanine nucleotide-binding protein subunit beta-4.	T-complex protein 1 subunit epsilon-like.	0.832
GNB4	PDC	ENSSSAP00000005848	ENSSSAP00000012909	Guanine nucleotide-binding protein subunit beta-4.	Phosducin-like.	0.878
GNB4	cct7	ENSSSAP00000005848	ENSSSAP00000037046	Guanine nucleotide-binding protein subunit beta-4.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.754
GNB4	tcp1	ENSSSAP00000005848	ENSSSAP00000017325	Guanine nucleotide-binding protein subunit beta-4.	T-complex protein 1 subunit alpha.	0.767
GNB4	tcpe	ENSSSAP00000005848	ENSSSAP00000113020	Guanine nucleotide-binding protein subunit beta-4.	T-complex protein 1 subunit epsilon.	0.832
LOC100380691	LOC106590610	ENSSSAP00000047835	ENSSSAP00000075204	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2.	T-complex protein 1 subunit epsilon-like.	0.832
LOC100380691	PDC	ENSSSAP00000047835	ENSSSAP00000012909	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2.	Phosducin-like.	0.878
LOC100380691	cct7	ENSSSAP00000047835	ENSSSAP00000037046	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.754
LOC100380691	tcp1	ENSSSAP00000047835	ENSSSAP00000017325	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2.	T-complex protein 1 subunit alpha.	0.767
LOC100380691	tcpe	ENSSSAP00000047835	ENSSSAP00000113020	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2.	T-complex protein 1 subunit epsilon.	0.832
LOC106565997	LOC106590610	ENSSSAP00000035466	ENSSSAP00000075204	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	T-complex protein 1 subunit epsilon-like.	0.832
LOC106565997	PDC	ENSSSAP00000035466	ENSSSAP00000012909	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	Phosducin-like.	0.878
LOC106565997	cct7	ENSSSAP00000035466	ENSSSAP00000037046	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.754
LOC106565997	tcp1	ENSSSAP00000035466	ENSSSAP00000017325	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	T-complex protein 1 subunit alpha.	0.767
LOC106565997	tcpe	ENSSSAP00000035466	ENSSSAP00000113020	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	T-complex protein 1 subunit epsilon.	0.832
LOC106567879	LOC106590610	ENSSSAP00000034767	ENSSSAP00000075204	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2-like.	T-complex protein 1 subunit epsilon-like.	0.832
LOC106567879	PDC	ENSSSAP00000034767	ENSSSAP00000012909	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2-like.	Phosducin-like.	0.878
LOC106567879	cct7	ENSSSAP00000034767	ENSSSAP00000037046	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2-like.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.754
LOC106567879	tcp1	ENSSSAP00000034767	ENSSSAP00000017325	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2-like.	T-complex protein 1 subunit alpha.	0.767
LOC106567879	tcpe	ENSSSAP00000034767	ENSSSAP00000113020	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2-like.	T-complex protein 1 subunit epsilon.	0.832