LOC106607317 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106607317

Formin-like protein 1. (1114 aa)

Predicted Functional Partners:

NPHP4

0.881

LOC106567263

0.643

LOC106565619

0.643

LOC106572399

0.643

LOC106583122

0.643

ENSSSAP00000010011

0.626

LOC106577129

0.626

LOC106584865

0.604

daam2

0.601

LOC106571498

0.601

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000010011	LOC106607317	ENSSSAP00000010011	ENSSSAP00000012910	Folliculin.	Formin-like protein 1.	0.626
LOC106565619	LOC106571498	ENSSSAP00000065127	ENSSSAP00000061763	Cell division control protein 42 homolog isoform X1.	Disheveled-associated activator of morphogenesis 1-like isoform X2.	0.632
LOC106565619	LOC106607317	ENSSSAP00000065127	ENSSSAP00000012910	Cell division control protein 42 homolog isoform X1.	Formin-like protein 1.	0.643
LOC106565619	daam2	ENSSSAP00000065127	ENSSSAP00000024315	Cell division control protein 42 homolog isoform X1.	Disheveled-associated activator of morphogenesis 2 isoform X1.	0.632
LOC106567263	LOC106571498	ENSSSAP00000029425	ENSSSAP00000061763	Cell division control protein 42 homolog isoform X2.	Disheveled-associated activator of morphogenesis 1-like isoform X2.	0.632
LOC106567263	LOC106607317	ENSSSAP00000029425	ENSSSAP00000012910	Cell division control protein 42 homolog isoform X2.	Formin-like protein 1.	0.643
LOC106567263	daam2	ENSSSAP00000029425	ENSSSAP00000024315	Cell division control protein 42 homolog isoform X2.	Disheveled-associated activator of morphogenesis 2 isoform X1.	0.632
LOC106571498	LOC106565619	ENSSSAP00000061763	ENSSSAP00000065127	Disheveled-associated activator of morphogenesis 1-like isoform X2.	Cell division control protein 42 homolog isoform X1.	0.632
LOC106571498	LOC106567263	ENSSSAP00000061763	ENSSSAP00000029425	Disheveled-associated activator of morphogenesis 1-like isoform X2.	Cell division control protein 42 homolog isoform X2.	0.632
LOC106571498	LOC106572399	ENSSSAP00000061763	ENSSSAP00000071256	Disheveled-associated activator of morphogenesis 1-like isoform X2.	Cell division control protein 42 homolog isoform X1.	0.632
LOC106571498	LOC106583122	ENSSSAP00000061763	ENSSSAP00000109877	Disheveled-associated activator of morphogenesis 1-like isoform X2.	Cell division control protein 42 homolog isoform X1.	0.632
LOC106571498	LOC106584865	ENSSSAP00000061763	ENSSSAP00000019085	Disheveled-associated activator of morphogenesis 1-like isoform X2.	Stomatin-like protein 1.	0.441
LOC106571498	LOC106607317	ENSSSAP00000061763	ENSSSAP00000012910	Disheveled-associated activator of morphogenesis 1-like isoform X2.	Formin-like protein 1.	0.601
LOC106571498	daam2	ENSSSAP00000061763	ENSSSAP00000024315	Disheveled-associated activator of morphogenesis 1-like isoform X2.	Disheveled-associated activator of morphogenesis 2 isoform X1.	0.878
LOC106572399	LOC106571498	ENSSSAP00000071256	ENSSSAP00000061763	Cell division control protein 42 homolog isoform X1.	Disheveled-associated activator of morphogenesis 1-like isoform X2.	0.632
LOC106572399	LOC106607317	ENSSSAP00000071256	ENSSSAP00000012910	Cell division control protein 42 homolog isoform X1.	Formin-like protein 1.	0.643
LOC106572399	daam2	ENSSSAP00000071256	ENSSSAP00000024315	Cell division control protein 42 homolog isoform X1.	Disheveled-associated activator of morphogenesis 2 isoform X1.	0.632
LOC106577129	LOC106607317	ENSSSAP00000017964	ENSSSAP00000012910	Folliculin-like.	Formin-like protein 1.	0.626
LOC106583122	LOC106571498	ENSSSAP00000109877	ENSSSAP00000061763	Cell division control protein 42 homolog isoform X1.	Disheveled-associated activator of morphogenesis 1-like isoform X2.	0.632
LOC106583122	LOC106607317	ENSSSAP00000109877	ENSSSAP00000012910	Cell division control protein 42 homolog isoform X1.	Formin-like protein 1.	0.643