Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106570201Thrombospondin-3b-like. (955 aa)    
Predicted Functional Partners:
LOC106605814
Integrin alpha-10-like; Belongs to the integrin alpha chain family.
   
 
 0.827
LOC106571235
Syndecan-1-like.
    
 0.813
LOC106568400
Integrin alpha-1-like isoform X2; Belongs to the integrin alpha chain family.
   
 
 0.779
LOC106562707
Integrin alpha-11-like; Belongs to the integrin alpha chain family.
   
 
 0.779
LOC106561820
Integrin alpha-1-like isoform X1; Belongs to the integrin alpha chain family.
   
 
 0.779
itga11
Integrin alpha-11; Belongs to the integrin alpha chain family.
   
 
 0.779
LOC106609495
Platelet glycoprotein 4-like; Belongs to the CD36 family.
    
 0.777
LOC106576427
Platelet glycoprotein 4-like; Belongs to the CD36 family.
    
 0.777
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
  0.766
ITGB1-2
Integrin beta; Belongs to the integrin beta chain family.
    
  0.766
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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