Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106607053HMG box-containing protein 4-like. (620 aa)    
Predicted Functional Partners:
LOC106611731
Proto-oncogene DBL-like isoform X1.
      
 0.838
LOC106604741
Proto-oncogene DBL-like isoform X2.
      
 0.838
LOC106612584
E3 ubiquitin-protein ligase TRIP12-like isoform X1.
    
 
 0.734
LOC106580884
E3 ubiquitin-protein ligase TRIP12 isoform X1.
    
 
 0.734
ENSSSAP00000078389
Synaptopodin 2-like b.
      
 0.718
LOC106589413
Synaptopodin 2-like protein isoform X1.
      
 0.718
ENSSSAP00000041945
RAB36, member RAS oncogene family.
      
 0.713
LOC106587007
PR domain zinc finger protein 12; Involved in the positive regulation of histone H3-K9 dimethylation; Belongs to the class V-like SAM-binding methyltransferase superfamily.
      
 0.663
LOC106601392
Nucleosome-remodeling factor subunit BPTF-like.
    
   0.636
ENSSSAP00000010873
annotation not available
    
   0.636
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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