STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106610756Rab3 GTPase-activating protein non-catalytic subunit-like isoform X1. (1364 aa)    
Predicted Functional Partners:
LOC106586310
Rab3 GTPase-activating protein catalytic subunit-like isoform X1.
   
 0.990
ENSSSAP00000056094
annotation not available
   
 0.990
RAB3GAP1
RAB3 GTPase activating protein catalytic subunit 1.
   
 0.990
LOC106602942
Rab proteins geranylgeranyltransferase component A 2-like isoform X1.
   
 
 0.842
LOC106590026
Ras-related protein Rab-18-like.
     
 0.827
rab18
Ras-related protein Rab-18.
     
 0.827
LOC106578546
Ras-related protein Rab-18.
     
 0.827
DCTN5
Dynactin subunit 5.
   
 
  0.754
LOC106604160
Dynactin subunit 4 isoform X1.
   
 
  0.695
LOC106612272
Dynactin subunit 4-like isoform X1.
   
 
  0.695
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.