Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106575903Uncharacterized protein LOC106575903. (1718 aa)    
Predicted Functional Partners:
rig-I
Retinoic acid-inducible gene-I.
    
 0.588
mad2l1bp
MAD2L1-binding protein isoform X4.
    
 
 0.552
ltn1
E3 ubiquitin-protein ligase listerin isoform X1.
   
    0.523
LOC106582055
Uncharacterized protein C3orf38-like.
      
 0.521
cssa25h3orf38
Uncharacterized protein C3orf38 homolog isoform X2.
      
 0.521
ENSSSAP00000076918
annotation not available
      
 0.521
LOC106603552
Nuclear receptor-interacting protein 1-like.
      
 0.489
LOC106567930
Nuclear receptor-interacting protein 1-like.
      
 0.489
LOC106565929
Zinc finger protein 618-like isoform X2.
    
 
 0.453
LOC106563271
Zinc finger protein 618-like.
    
 
 0.453
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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