LOC106562128 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106562128

Meiotic recombination protein REC114-like. (231 aa)

Predicted Functional Partners:

ttf2

0.977

LOC106605164

0.915

LOC106582635

0.915

LOC106603393

0.908

lig3

0.905

ENSSSAP00000115415

0.905

fcsk

0.886

LOC106585761

0.844

nek9

0.832

LOC106588764

0.828

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000115415	LOC106562128	ENSSSAP00000115415	ENSSSAP00000012979	annotation not available	Meiotic recombination protein REC114-like.	0.905
ENSSSAP00000115415	LOC106582635	ENSSSAP00000115415	ENSSSAP00000083146	annotation not available	DNA repair protein XRCC1-like.	0.989
ENSSSAP00000115415	LOC106585761	ENSSSAP00000115415	ENSSSAP00000096106	annotation not available	DNA repair protein XRCC4-like isoform X1.	0.953
ENSSSAP00000115415	LOC106588764	ENSSSAP00000115415	ENSSSAP00000000730	annotation not available	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.804
ENSSSAP00000115415	LOC106603393	ENSSSAP00000115415	ENSSSAP00000114068	annotation not available	Short transient receptor potential channel 2-like.	0.982
ENSSSAP00000115415	LOC106605164	ENSSSAP00000115415	ENSSSAP00000054789	annotation not available	DNA repair protein XRCC1-like.	0.989
LOC106562128	ENSSSAP00000115415	ENSSSAP00000012979	ENSSSAP00000115415	Meiotic recombination protein REC114-like.	annotation not available	0.905
LOC106562128	LOC106582635	ENSSSAP00000012979	ENSSSAP00000083146	Meiotic recombination protein REC114-like.	DNA repair protein XRCC1-like.	0.915
LOC106562128	LOC106585761	ENSSSAP00000012979	ENSSSAP00000096106	Meiotic recombination protein REC114-like.	DNA repair protein XRCC4-like isoform X1.	0.844
LOC106562128	LOC106588764	ENSSSAP00000012979	ENSSSAP00000000730	Meiotic recombination protein REC114-like.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.828
LOC106562128	LOC106603393	ENSSSAP00000012979	ENSSSAP00000114068	Meiotic recombination protein REC114-like.	Short transient receptor potential channel 2-like.	0.908
LOC106562128	LOC106605164	ENSSSAP00000012979	ENSSSAP00000054789	Meiotic recombination protein REC114-like.	DNA repair protein XRCC1-like.	0.915
LOC106562128	fcsk	ENSSSAP00000012979	ENSSSAP00000072099	Meiotic recombination protein REC114-like.	L-fucose kinase.	0.886
LOC106562128	lig3	ENSSSAP00000012979	ENSSSAP00000058163	Meiotic recombination protein REC114-like.	DNA ligase.	0.905
LOC106562128	nek9	ENSSSAP00000012979	ENSSSAP00000005036	Meiotic recombination protein REC114-like.	Serine/threonine-protein kinase Nek9.	0.832
LOC106562128	ttf2	ENSSSAP00000012979	ENSSSAP00000080271	Meiotic recombination protein REC114-like.	Transcription termination factor 2 isoform X1.	0.977
LOC106582635	ENSSSAP00000115415	ENSSSAP00000083146	ENSSSAP00000115415	DNA repair protein XRCC1-like.	annotation not available	0.989
LOC106582635	LOC106562128	ENSSSAP00000083146	ENSSSAP00000012979	DNA repair protein XRCC1-like.	Meiotic recombination protein REC114-like.	0.915
LOC106582635	LOC106585761	ENSSSAP00000083146	ENSSSAP00000096106	DNA repair protein XRCC1-like.	DNA repair protein XRCC4-like isoform X1.	0.596
LOC106582635	LOC106588764	ENSSSAP00000083146	ENSSSAP00000000730	DNA repair protein XRCC1-like.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.930