Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106562128Meiotic recombination protein REC114-like. (231 aa)    
Predicted Functional Partners:
mei4
Meiosis-specific protein MEI4-like.
    
 
 0.971
nek9
Serine/threonine-protein kinase Nek9.
   
  
 0.954
LOC106605164
DNA repair protein XRCC1-like.
   
 0.948
LOC106582635
DNA repair protein XRCC1-like.
   
 0.948
lig3
DNA ligase.
   
 0.937
ENSSSAP00000115415
annotation not available
   
 0.937
ttf2
Transcription termination factor 2 isoform X1.
  
 
 0.927
rec8
Meiotic recombination protein REC8 homolog isoform X3.
      
 0.927
LOC106603393
Short transient receptor potential channel 2-like.
   
 0.923
msh4
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 
 0.905
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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