STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf13E3 ubiquitin-protein ligase RNF13 isoform X1. (380 aa)    
Predicted Functional Partners:
LOC106562992
polyubiquitin-B.
    
  0.634
LOC100194654
Salmo salar ribosomal protein S27-3 (LOC100194654), mRNA.
    
  0.595
LOC106577118
ubiquitin-40S ribosomal protein S27a.
    
  0.595
LOC106608596
Ubiquitin thioesterase.
    
 0.568
otub2
Ubiquitin thioesterase OTUB2.
    
 0.557
otub1
Methyltransferase-like protein 12, mitochondrial isoform X1.
    
 0.557
parp16
Poly [ADP-ribose] polymerase.
    
 
 0.556
ENSSSAP00000019398
annotation not available
    
  0.461
LOC106599031
Ubiquitin A-52 residue ribosomal protein fusion product 1like 2.
    
  0.461
ENSSSAP00000071551
annotation not available
    
  0.461
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.