STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106576579PDZ domain-containing RING finger protein 4-like. (703 aa)    
Predicted Functional Partners:
LOC106606575
Baculoviral IAP repeat-containing protein 6-like isoform X14.
   
 0.818
MIB2
E3 ubiquitin-protein ligase MIB2-like isoform X1.
    
 0.777
LOC106566874
E3 ubiquitin-protein ligase MIB2-like.
    
 0.777
LOC106572481-2
Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.
   
 0.732
LOC106572481
Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.
   
 0.732
ENSSSAP00000041153
annotation not available
   
 0.732
LOC106608776
E3 ubiquitin-protein ligase KEG-like.
    
 0.685
ENSSSAP00000025099
annotation not available
   
 0.663
LOC106603528
Receptor-interacting serine/threonine-protein kinase 4-like.
   
 0.663
RIPK4
Receptor-interacting serine/threonine-protein kinase 4-like.
   
 0.663
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.