LOC106603486 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106603486

ADP-ribosylation factor-like protein 9 isoform X1. (220 aa)

Predicted Functional Partners:

gak

0.691

LOC106606442

0.663

LOC106576680

0.663

LOC106565400

0.658

LOC106583332

0.658

LOC106611341

0.642

ENSSSAP00000067020

0.642

copd

0.629

arcn1

0.629

copa

0.622

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000067020	LOC106565400	ENSSSAP00000067020	ENSSSAP00000042530	Intersectin 2b.	ADP-ribosylation factor GTPase-activating protein 1-like isoform X2.	0.663
ENSSSAP00000067020	LOC106583332	ENSSSAP00000067020	ENSSSAP00000054523	Intersectin 2b.	ADP-ribosylation factor GTPase-activating protein 1-like isoform X1.	0.663
ENSSSAP00000067020	LOC106603486	ENSSSAP00000067020	ENSSSAP00000013166	Intersectin 2b.	ADP-ribosylation factor-like protein 9 isoform X1.	0.642
ENSSSAP00000067020	LOC106611341	ENSSSAP00000067020	ENSSSAP00000005858	Intersectin 2b.	Intersectin-2-like.	0.961
ENSSSAP00000067020	gak	ENSSSAP00000067020	ENSSSAP00000102592	Intersectin 2b.	cyclin-G-associated kinase isoform X1.	0.904
LOC106565400	ENSSSAP00000067020	ENSSSAP00000042530	ENSSSAP00000067020	ADP-ribosylation factor GTPase-activating protein 1-like isoform X2.	Intersectin 2b.	0.663
LOC106565400	LOC106576680	ENSSSAP00000042530	ENSSSAP00000104045	ADP-ribosylation factor GTPase-activating protein 1-like isoform X2.	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1-like isoform X6.	0.877
LOC106565400	LOC106603486	ENSSSAP00000042530	ENSSSAP00000013166	ADP-ribosylation factor GTPase-activating protein 1-like isoform X2.	ADP-ribosylation factor-like protein 9 isoform X1.	0.658
LOC106565400	LOC106606442	ENSSSAP00000042530	ENSSSAP00000003355	ADP-ribosylation factor GTPase-activating protein 1-like isoform X2.	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1-like isoform X5.	0.877
LOC106565400	LOC106611341	ENSSSAP00000042530	ENSSSAP00000005858	ADP-ribosylation factor GTPase-activating protein 1-like isoform X2.	Intersectin-2-like.	0.663
LOC106565400	arcn1	ENSSSAP00000042530	ENSSSAP00000087123	ADP-ribosylation factor GTPase-activating protein 1-like isoform X2.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.867
LOC106565400	copa	ENSSSAP00000042530	ENSSSAP00000011420	ADP-ribosylation factor GTPase-activating protein 1-like isoform X2.	Coatomer subunit alpha.	0.761
LOC106565400	copd	ENSSSAP00000042530	ENSSSAP00000056075	ADP-ribosylation factor GTPase-activating protein 1-like isoform X2.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.867
LOC106576680	LOC106565400	ENSSSAP00000104045	ENSSSAP00000042530	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1-like isoform X6.	ADP-ribosylation factor GTPase-activating protein 1-like isoform X2.	0.877
LOC106576680	LOC106583332	ENSSSAP00000104045	ENSSSAP00000054523	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1-like isoform X6.	ADP-ribosylation factor GTPase-activating protein 1-like isoform X1.	0.877
LOC106576680	LOC106603486	ENSSSAP00000104045	ENSSSAP00000013166	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1-like isoform X6.	ADP-ribosylation factor-like protein 9 isoform X1.	0.663
LOC106576680	arcn1	ENSSSAP00000104045	ENSSSAP00000087123	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1-like isoform X6.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.747
LOC106576680	copa	ENSSSAP00000104045	ENSSSAP00000011420	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1-like isoform X6.	Coatomer subunit alpha.	0.863
LOC106576680	copd	ENSSSAP00000104045	ENSSSAP00000056075	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1-like isoform X6.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.747
LOC106583332	ENSSSAP00000067020	ENSSSAP00000054523	ENSSSAP00000067020	ADP-ribosylation factor GTPase-activating protein 1-like isoform X1.	Intersectin 2b.	0.663