STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106569363Myosin heavy chain, fast skeletal muscle-like isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1941 aa)    
Predicted Functional Partners:
LOC100194642
Myosin, light polypeptide 3-1.
   
 0.764
LOC100194662
Myosin light chain 1-1.
   
 0.764
LOC106565518
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.
   
 0.764
LOC106578961
Actin, aortic smooth muscle.
   
 0.684
LOC106578961-2
Actin, aortic smooth muscle.
   
 0.684
LOC106589658
Actin, alpha skeletal muscle 2-like.
   
 0.680
LOC106564730
Actin, alpha skeletal muscle 2-like.
   
 0.680
LOC106589658-2
Actin, alpha skeletal muscle 2-like.
   
 0.680
tpm3
Tropomyosin alpha-3 chain isoform X3; Belongs to the tropomyosin family.
   
 0.675
myl6b
Salmo salar Myosin light polypeptide 6B (myl6b), mRNA.
   
 0.663
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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