STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106596569ATP-dependent RNA helicase DDX42-like isoform X2. (148 aa)    
Predicted Functional Partners:
LOC106586372
Splicing factor 3B subunit 1 isoform X1.
   
 0.952
LOC100380860
Splicing factor 3B subunit 1 isoform X1.
   
 0.952
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.949
sf3b3-2
Splicing factor 3B subunit 3.
   
 0.925
sf3b3
Splicing factor 3B subunit 3.
   
 0.925
sf3a2
Splicing factor 3A subunit 2.
    
 0.903
LOC106599988
Splicing factor 3A subunit 2-like.
    
 0.903
ENSSSAP00000000816
annotation not available
    
 0.885
ENSSSAP00000027874
annotation not available
    
 0.858
LOC106609350
PHD finger-like domain-containing protein 5A isoform X1.
    
 0.844
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.