STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf4U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1. (536 aa)    
Predicted Functional Partners:
mfap1
Microfibrillar-associated protein 1.
   
 0.999
ppih
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.999
ENSSSAP00000021698
annotation not available
   
 0.999
lsm2
U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.999
prpf3
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 0.999
zmat2
Zinc finger matrin-type protein 2.
   
  0.998
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
   
 0.994
ENSSSAP00000018716
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.994
LOC106600990
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.994
LOC106607257
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.994
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.