STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106560671Lissencephaly-1 homolog B-like. (414 aa)    
Predicted Functional Partners:
nudc
Nuclear migration protein NudC.
   
 0.905
LOC106588611
Nuclear migration protein nudC-like.
   
 0.905
DCTN2
Dynactin subunit 2-like.
    
 0.876
DCTN2-2
Dynactin subunit 2.
    
 0.876
LOC106611399
Dynactin subunit 1-like.
    
 0.847
LOC106577911
Dynactin subunit 1-like isoform X3.
    
 0.847
LOC106608960
Dynactin subunit 1-like isoform X2.
    
 0.847
LOC106603362
Platelet-activating factor acetylhydrolase IB subunit beta-like.
    
 0.832
LOC106605558
Platelet-activating factor acetylhydrolase IB subunit gamma-like isoform X2.
    
 0.832
LOC106605552
Platelet-activating factor acetylhydrolase IB subunit gamma-like.
    
 0.832
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.