STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106570752OTU domain-containing protein 6B-like isoform X2. (304 aa)    
Predicted Functional Partners:
LOC106600434
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.638
LOC106569325
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.638
LOC106608596
Ubiquitin thioesterase.
    
 
 0.620
mysm1
Histone H2A deubiquitinase MYSM1.
   
 
 0.619
LOC106613979
Histone H2A deubiquitinase MYSM1-like.
   
 
 0.619
LOC106603638
Ubiquitin carboxyl-terminal hydrolase 28-like isoform X1; Belongs to the peptidase C19 family.
   
  
 0.614
LOC106579522
COP9 constitutive photomorphogenic homolog subunit 5.
   
  
 0.614
LOC100194713
Ubiquitin carboxyl-terminal hydrolase 28 isoform X4; Belongs to the peptidase C19 family.
   
  
 0.614
LOC106603551
Ubiquitin carboxyl-terminal hydrolase 25-like isoform X1; Belongs to the peptidase C19 family.
   
  
 0.614
LOC106567933
Ubiquitin carboxyl-terminal hydrolase 25-like isoform X5; Belongs to the peptidase C19 family.
   
  
 0.614
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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