STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d19TBC1 domain family member 19. (526 aa)    
Predicted Functional Partners:
nicn1
Nicolin-1.
    
   0.891
LOC106576374
Probable tubulin polyglutamylase TTLL1 isoform X1.
   
 
 0.847
LOC100380708
Probable tubulin polyglutamylase TTLL1.
   
 
 0.847
LOC106562345
Leucine-rich repeat-containing protein 49-like isoform X1.
   
   0.670
LOC106587561
Leucine-rich repeat-containing protein 49-like isoform X1.
   
   0.670
LOC106604770
Tubulin--tyrosine ligase-like isoform X1.
   
 
 0.656
LOC106576805
Tubulin--tyrosine ligase-like.
   
 
 0.656
LOC106566872
Protein polyglycylase TTLL10-like isoform X2.
   
 
 0.622
haus3
HAUS augmin-like complex subunit 3.
      
 0.600
TBC1D13
TBC1 domain family member 13-like.
      
 0.598
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.