FAM126B protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FAM126B

Protein FAM126B-like. (501 aa)

Predicted Functional Partners:

ENSSSAP00000041324

0.810

LOC106574556

0.792

LOC106575341

0.792

ENSSSAP00000032546

0.770

LOC106568281

0.770

pi4ka

0.770

MAPK11

0.741

LOC106605097

0.725

TTC7B

0.725

LOC106601235

0.725

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000032546	FAM126B	ENSSSAP00000032546	ENSSSAP00000033841	annotation not available	Protein FAM126B-like.	0.770
ENSSSAP00000032546	LOC106601235	ENSSSAP00000032546	ENSSSAP00000018038	annotation not available	Tetratricopeptide repeat protein 7B isoform X1.	0.880
ENSSSAP00000032546	LOC106605097	ENSSSAP00000032546	ENSSSAP00000002565	annotation not available	Tetratricopeptide repeat protein 7A-like isoform X2.	0.880
ENSSSAP00000032546	TTC7B	ENSSSAP00000032546	ENSSSAP00000005072	annotation not available	Tetratricopeptide repeat domain 7B.	0.880
ENSSSAP00000041324	FAM126B	ENSSSAP00000041324	ENSSSAP00000033841	Mitogen-activated protein kinase 11.	Protein FAM126B-like.	0.810
ENSSSAP00000041324	LOC106574556	ENSSSAP00000041324	ENSSSAP00000035245	Mitogen-activated protein kinase 11.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.641
ENSSSAP00000041324	LOC106575341	ENSSSAP00000041324	ENSSSAP00000120619	Mitogen-activated protein kinase 11.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.641
FAM126B	ENSSSAP00000032546	ENSSSAP00000033841	ENSSSAP00000032546	Protein FAM126B-like.	annotation not available	0.770
FAM126B	ENSSSAP00000041324	ENSSSAP00000033841	ENSSSAP00000041324	Protein FAM126B-like.	Mitogen-activated protein kinase 11.	0.810
FAM126B	LOC106568281	ENSSSAP00000033841	ENSSSAP00000117550	Protein FAM126B-like.	Phosphatidylinositol 4-kinase alpha-like.	0.770
FAM126B	LOC106574556	ENSSSAP00000033841	ENSSSAP00000035245	Protein FAM126B-like.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.792
FAM126B	LOC106575341	ENSSSAP00000033841	ENSSSAP00000120619	Protein FAM126B-like.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.792
FAM126B	LOC106601235	ENSSSAP00000033841	ENSSSAP00000018038	Protein FAM126B-like.	Tetratricopeptide repeat protein 7B isoform X1.	0.725
FAM126B	LOC106605097	ENSSSAP00000033841	ENSSSAP00000002565	Protein FAM126B-like.	Tetratricopeptide repeat protein 7A-like isoform X2.	0.725
FAM126B	MAPK11	ENSSSAP00000033841	ENSSSAP00000112576	Protein FAM126B-like.	Mitogen-activated protein kinase.	0.741
FAM126B	TTC7B	ENSSSAP00000033841	ENSSSAP00000005072	Protein FAM126B-like.	Tetratricopeptide repeat domain 7B.	0.725
FAM126B	pi4ka	ENSSSAP00000033841	ENSSSAP00000118973	Protein FAM126B-like.	Phosphatidylinositol 4-kinase alpha isoform X1; Belongs to the PI3/PI4-kinase family.	0.770
LOC106568281	FAM126B	ENSSSAP00000117550	ENSSSAP00000033841	Phosphatidylinositol 4-kinase alpha-like.	Protein FAM126B-like.	0.770
LOC106568281	LOC106601235	ENSSSAP00000117550	ENSSSAP00000018038	Phosphatidylinositol 4-kinase alpha-like.	Tetratricopeptide repeat protein 7B isoform X1.	0.880
LOC106568281	LOC106605097	ENSSSAP00000117550	ENSSSAP00000002565	Phosphatidylinositol 4-kinase alpha-like.	Tetratricopeptide repeat protein 7A-like isoform X2.	0.880