STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106578693Charged multivesicular body protein 5-like. (220 aa)    
Predicted Functional Partners:
LOC100194664
Vps20-associated 1 like 1 isoform X1.
   
 0.981
LOC106571414
Vacuolar protein sorting-associated protein VTA1 homolog.
   
 0.981
LOC106613857
Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.
   
 0.975
LOC106560901
Vacuolar protein sorting-associated protein 4A isoform X5; Belongs to the AAA ATPase family.
   
 0.975
LOC106584355
Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.
   
 0.975
LOC106599662
Vacuolar protein sorting-associated protein 4B isoform X1; Belongs to the AAA ATPase family.
   
 0.975
VPS4B
Vacuolar protein sorting-associated protein 4B-like isoform X1; Belongs to the AAA ATPase family.
   
 0.975
LOC106579304
Charged multivesicular body protein 2a-like.
   
 0.942
LOC106589279
Charged multivesicular body protein 2A.
   
 0.942
CHMP3
Charged multivesicular body protein 3.
   
 0.912
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.