Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ENSSSAP00000025737 | LOC106568497 | ENSSSAP00000025737 | ENSSSAP00000039507 | annotation not available | Probable E3 ubiquitin-protein ligase HERC1. | 0.602 |
ENSSSAP00000025737 | LOC106582182 | ENSSSAP00000025737 | ENSSSAP00000055100 | annotation not available | E3 SUMO-protein ligase RanBP2-like isoform X4. | 0.483 |
ENSSSAP00000025737 | ND4 | ENSSSAP00000025737 | ENSSSAP00000000011 | annotation not available | NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). | 0.572 |
LOC106562992 | LOC106568497 | ENSSSAP00000031692 | ENSSSAP00000039507 | polyubiquitin-B. | Probable E3 ubiquitin-protein ligase HERC1. | 0.681 |
LOC106562992 | LOC106584429 | ENSSSAP00000031692 | ENSSSAP00000020311 | polyubiquitin-B. | E3 SUMO-protein ligase PIAS4-like. | 0.702 |
LOC106562992 | LOC106613774 | ENSSSAP00000031692 | ENSSSAP00000068401 | polyubiquitin-B. | E3 SUMO-protein ligase PIAS4-like isoform X1. | 0.702 |
LOC106562992 | brca1 | ENSSSAP00000031692 | ENSSSAP00000106017 | polyubiquitin-B. | Breast cancer type 1 susceptibility protein isoform X2. | 0.862 |
LOC106562992 | rnf8 | ENSSSAP00000031692 | ENSSSAP00000030673 | polyubiquitin-B. | E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] | 0.990 |
LOC106568497 | ENSSSAP00000025737 | ENSSSAP00000039507 | ENSSSAP00000025737 | Probable E3 ubiquitin-protein ligase HERC1. | annotation not available | 0.602 |
LOC106568497 | LOC106562992 | ENSSSAP00000039507 | ENSSSAP00000031692 | Probable E3 ubiquitin-protein ligase HERC1. | polyubiquitin-B. | 0.681 |
LOC106568497 | LOC106577658 | ENSSSAP00000039507 | ENSSSAP00000047125 | Probable E3 ubiquitin-protein ligase HERC1. | Neuralized-like protein 4 isoform X1. | 0.631 |
LOC106568497 | LOC106582182 | ENSSSAP00000039507 | ENSSSAP00000055100 | Probable E3 ubiquitin-protein ligase HERC1. | E3 SUMO-protein ligase RanBP2-like isoform X4. | 0.602 |
LOC106568497 | LOC106584429 | ENSSSAP00000039507 | ENSSSAP00000020311 | Probable E3 ubiquitin-protein ligase HERC1. | E3 SUMO-protein ligase PIAS4-like. | 0.654 |
LOC106568497 | LOC106608752 | ENSSSAP00000039507 | ENSSSAP00000119221 | Probable E3 ubiquitin-protein ligase HERC1. | Neuralized-like protein 4 isoform X3. | 0.631 |
LOC106568497 | LOC106613774 | ENSSSAP00000039507 | ENSSSAP00000068401 | Probable E3 ubiquitin-protein ligase HERC1. | E3 SUMO-protein ligase PIAS4-like isoform X1. | 0.654 |
LOC106568497 | ND4 | ENSSSAP00000039507 | ENSSSAP00000000011 | Probable E3 ubiquitin-protein ligase HERC1. | NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). | 0.669 |
LOC106568497 | brca1 | ENSSSAP00000039507 | ENSSSAP00000106017 | Probable E3 ubiquitin-protein ligase HERC1. | Breast cancer type 1 susceptibility protein isoform X2. | 0.665 |
LOC106568497 | rnf8 | ENSSSAP00000039507 | ENSSSAP00000030673 | Probable E3 ubiquitin-protein ligase HERC1. | E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] | 0.833 |
LOC106577658 | LOC106568497 | ENSSSAP00000047125 | ENSSSAP00000039507 | Neuralized-like protein 4 isoform X1. | Probable E3 ubiquitin-protein ligase HERC1. | 0.631 |
LOC106582182 | ENSSSAP00000025737 | ENSSSAP00000055100 | ENSSSAP00000025737 | E3 SUMO-protein ligase RanBP2-like isoform X4. | annotation not available | 0.483 |
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