STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106578195Protein phosphatase 1K, mitochondrial-like. (149 aa)    
Predicted Functional Partners:
bckdha
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
   
 0.865
LOC106605051
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like.
   
 0.856
LOC100194712
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial.
   
 0.856
dbt
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
 0.796
LOC106613594
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
 0.796
ENSSSAP00000116555
annotation not available
    
   0.587
LOC106584548
Dihydrolipoyl dehydrogenase, mitochondrial-like.
   
 0.558
LOC106561021
Dihydrolipoyl dehydrogenase.
   
 0.558
LOC106572481-2
Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.
     
 0.541
LOC106572481
Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.
     
 0.541
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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