STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smad1Mothers against decapentaplegic homolog. (474 aa)    
Predicted Functional Partners:
LOC106563948
Mothers against decapentaplegic homolog.
   
0.931
LOC106568180
Mothers against decapentaplegic homolog.
   
0.931
smad4
Mothers against decapentaplegic homolog.
   
0.931
LOC106580167
Mothers against decapentaplegic homolog.
   
0.917
LOC106588319
Mothers against decapentaplegic homolog.
   
0.917
LOC106569881
Mothers against decapentaplegic homolog.
   
0.917
LOC106605446
Mothers against decapentaplegic homolog.
   
0.917
LOC106604380
Integrator complex subunit 5-like.
    
 0.881
LOC106606127
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
   
 0.878
bmpr1a
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
   
 0.878
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.