STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106581644Regulator of nonsense transcripts 3A-like isoform X3. (485 aa)    
Predicted Functional Partners:
LOC106609128
Regulator of nonsense transcripts 2-like isoform X3.
   
 0.998
LOC106584057
Protein mago nashi homolog; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs throughout all stages of mRNA metabolism thereby infl [...]
    
 0.992
LOC106560432
Protein mago nashi homolog.
    
 0.992
LOC106613627
Regulator of nonsense transcripts 1-like isoform X1.
    
 0.985
LOC106573910
Regulator of nonsense transcripts 1-like isoform X2.
    
 0.985
LOC106568944
Regulator of nonsense transcripts 1 isoform X4.
    
 0.985
LOC106599024
Regulator of nonsense transcripts 1-like isoform X3.
    
 0.985
ENSSSAP00000088686
annotation not available
   
 0.984
nxf1
Nuclear RNA export factor 1.
    
 0.975
LOC106604390
Nuclear RNA export factor 1-like isoform X1.
    
 0.975
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.