STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611640TBC1 domain family member 2A-like. (1000 aa)    
Predicted Functional Partners:
wdr90
WD repeat-containing protein 90.
    
  0.765
LOC106608776
E3 ubiquitin-protein ligase KEG-like.
    
 
 0.667
nrde2
Protein NRDE2 homolog isoform X1.
    
 
 0.652
LOC106565552
Ras-related protein Rab-7a.
    
 0.625
LOC106579849
Ras-related protein Rab-7a-like.
    
 0.625
LOC106563067
Ras-related protein Rab-7a-like.
    
 0.625
LOC106583206
Ras-related protein Rab-7a-like isoform X1.
    
 0.625
LOC106567937
Ras-related protein Rab-7a-like.
    
 0.625
RAB7A
Ras-related protein Rab-7a-like.
    
 0.625
ENSSSAP00000121021
RAB7a, member RAS oncogene family.
    
 0.625
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.