STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF7-2E3 ubiquitin-protein ligase MARCH7-like. (784 aa)    
Predicted Functional Partners:
ube2g2
Ubiquitin-conjugating enzyme E2 G2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.570
faf2
FAS-associated factor 2.
    
 
 0.483
clcb
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
 
 0.483
ubxn8
UBX domain-containing protein 6.
    
 
 0.483
LOC106613896
FAS-associated factor 1-like isoform X1.
    
 
 0.483
LOC106584329
FAS-associated factor 1-like isoform X1.
    
 
 0.483
LOC106560998
CCR4-NOT transcription complex subunit 2-like isoform X3.
    
 
 0.451
LOC106597592
CCR4-NOT transcription complex subunit 2-like.
    
 
 0.451
ENSSSAP00000022531
annotation not available
    
 
 0.451
ENSSSAP00000050742
annotation not available
    
 
 0.451
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.