STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106571476G patch domain-containing protein 2-like isoform X2. (520 aa)    
Predicted Functional Partners:
LOC106567721
RNA helicase.
    
 0.943
nol6
Nucleolar protein 6.
   
 
 0.934
nop14
Nucleolar protein 14 isoform X1.
    
   0.925
utp25
Digestive organ expansion factor homolog isoform X1.
    
   0.925
imp3
U3 small nucleolar ribonucleoprotein protein IMP3.
    
   0.925
utp3
Something about silencing protein 10 isoform X2.
    
   0.925
DHX15
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1.
    
 0.905
LOC106609999
Microsomal triglyceride transfer protein large subunit-like.
    
 0.905
ENSSSAP00000070804
DEAH (Asp-Glu-Ala-His) box helicase 15.
    
 0.905
LOC106577609
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like.
    
 0.905
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.