STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106570586Transcription factor Sp4-like isoform X1. (764 aa)    
Predicted Functional Partners:
sp1
Transcription factor Sp1 isoform X2.
    
0.685
LOC106573719
Transmembrane protein 196-like.
      
 0.601
ufc1
Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with ufm1 via a thioester linkage.
      
 0.560
LOC106588729
Transmembrane protein 196-like isoform X2.
      
 0.558
LOC106588729-2
Transmembrane protein 196-like isoform X1.
      
 0.558
hps4
Hermansky-Pudlak syndrome 4 protein.
      
 0.502
LOC106588796
Cell division cycle-associated 7-like protein isoform X3.
      
 0.468
LOC106570587
Cell division cycle-associated 7-like protein isoform X2.
      
 0.468
HPS6
Hermansky-Pudlak syndrome 6 protein.
      
 0.426
ufm1
Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes. Belongs to the UFM1 family.
      
 0.420
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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