STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRYBB2Beta-crystallin B2-like; Belongs to the beta/gamma-crystallin family. (229 aa)    
Predicted Functional Partners:
ENSSSAP00000038091
annotation not available
   
 
 0.808
LOC106574754
Alpha-crystallin A chain; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.808
LOC106575813
Beta-crystallin S-like; Belongs to the beta/gamma-crystallin family.
   
 
0.566
CRYGS
Beta-crystallin S-like; Belongs to the beta/gamma-crystallin family.
   
 
0.566
ctu1
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
      
 0.558
LOC106575594
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
  
   
 0.527
Gja3
Gap junction alpha-3 protein.
  
   
 0.524
tmem114
Transmembrane protein 114.
      
 0.516
hspb2
Heat shock protein beta-2; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.515
LOC106607169
Filensin-like isoform X2; Belongs to the intermediate filament family.
      
 0.510
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.