STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106605667Tetraspanin. (303 aa)    
Predicted Functional Partners:
upk2
Uroplakin-2 precursor.
  
 
 0.778
upk1b
Uroplakin-1b; Belongs to the tetraspanin (TM4SF) family.
  
  
0.629
mplkip
TTD non-photosensitive 1 protein homolog.
  
   
 0.610
LOC106567080
Tetraspanin-31-like; Belongs to the tetraspanin (TM4SF) family.
      
 0.510
TSPAN31
Tetraspanin-31-like; Belongs to the tetraspanin (TM4SF) family.
      
 0.510
mab21l3
Protein mab-21-like 3.
  
     0.434
LOC106577474
G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.
  
     0.424
LOC106577442
G-protein coupled receptor 4-like; Belongs to the G-protein coupled receptor 1 family.
  
     0.422
LOC106580787
Protein NLRC3-like.
  
     0.422
LOC106561962
Synaptotagmin-13-like.
  
  
  0.421
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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