LOC106566062 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106566062

Sodium-coupled neutral amino acid transporter 3-like isoform X3. (522 aa)

Predicted Functional Partners:

rraga

0.763

LOC106605307

0.656

LOC106580651

0.656

LAMTOR1

0.627

lamtor1

0.627

LOC106566397

0.617

XIP

0.617

LOC106609143

0.600

LOC106576032

0.600

LOC106570772

0.592

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LAMTOR1	LOC106566062	ENSSSAP00000043646	ENSSSAP00000055582	Ragulator complex protein LAMTOR1-like.	Sodium-coupled neutral amino acid transporter 3-like isoform X3.	0.627
LAMTOR1	LOC106566397	ENSSSAP00000043646	ENSSSAP00000035691	Ragulator complex protein LAMTOR1-like.	Ragulator complex protein LAMTOR5-like isoform X2.	0.998
LAMTOR1	LOC106576032	ENSSSAP00000043646	ENSSSAP00000089528	Ragulator complex protein LAMTOR1-like.	Ragulator complex protein LAMTOR4-like.	0.999
LAMTOR1	LOC106580651	ENSSSAP00000043646	ENSSSAP00000093921	Ragulator complex protein LAMTOR1-like.	Ragulator complex protein LAMTOR2.	0.993
LAMTOR1	LOC106605307	ENSSSAP00000043646	ENSSSAP00000017241	Ragulator complex protein LAMTOR1-like.	Ragulator complex protein LAMTOR2; Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex, may activate the TOR signaling cascade in response to amino acids. Adapter protein that may regulate the MAP kinase cascade (By similarity).	0.999
LAMTOR1	LOC106609143	ENSSSAP00000043646	ENSSSAP00000062108	Ragulator complex protein LAMTOR1-like.	Ragulator complex protein LAMTOR4.	0.999
LAMTOR1	XIP	ENSSSAP00000043646	ENSSSAP00000088440	Ragulator complex protein LAMTOR1-like.	Hepatitis B virus X-interacting protein isoform X2.	0.998
LAMTOR1	lamtor1	ENSSSAP00000043646	ENSSSAP00000074584	Ragulator complex protein LAMTOR1-like.	Ragulator complex protein LAMTOR1 isoform X1.	0.900
LAMTOR1	rraga	ENSSSAP00000043646	ENSSSAP00000016806	Ragulator complex protein LAMTOR1-like.	Ras-related GTP-binding protein A isoform X1.	0.995
LOC106566062	LAMTOR1	ENSSSAP00000055582	ENSSSAP00000043646	Sodium-coupled neutral amino acid transporter 3-like isoform X3.	Ragulator complex protein LAMTOR1-like.	0.627
LOC106566062	LOC106566397	ENSSSAP00000055582	ENSSSAP00000035691	Sodium-coupled neutral amino acid transporter 3-like isoform X3.	Ragulator complex protein LAMTOR5-like isoform X2.	0.617
LOC106566062	LOC106570772	ENSSSAP00000055582	ENSSSAP00000034363	Sodium-coupled neutral amino acid transporter 3-like isoform X3.	Regulating synaptic membrane exocytosis protein 2-like.	0.592
LOC106566062	LOC106576032	ENSSSAP00000055582	ENSSSAP00000089528	Sodium-coupled neutral amino acid transporter 3-like isoform X3.	Ragulator complex protein LAMTOR4-like.	0.600
LOC106566062	LOC106580651	ENSSSAP00000055582	ENSSSAP00000093921	Sodium-coupled neutral amino acid transporter 3-like isoform X3.	Ragulator complex protein LAMTOR2.	0.656
LOC106566062	LOC106605307	ENSSSAP00000055582	ENSSSAP00000017241	Sodium-coupled neutral amino acid transporter 3-like isoform X3.	Ragulator complex protein LAMTOR2; Regulator of the TOR pathway, a signaling cascade that promotes cell growth in response to growth factors, energy levels, and amino acids. As part of the Ragulator complex, may activate the TOR signaling cascade in response to amino acids. Adapter protein that may regulate the MAP kinase cascade (By similarity).	0.656
LOC106566062	LOC106609143	ENSSSAP00000055582	ENSSSAP00000062108	Sodium-coupled neutral amino acid transporter 3-like isoform X3.	Ragulator complex protein LAMTOR4.	0.600
LOC106566062	XIP	ENSSSAP00000055582	ENSSSAP00000088440	Sodium-coupled neutral amino acid transporter 3-like isoform X3.	Hepatitis B virus X-interacting protein isoform X2.	0.617
LOC106566062	lamtor1	ENSSSAP00000055582	ENSSSAP00000074584	Sodium-coupled neutral amino acid transporter 3-like isoform X3.	Ragulator complex protein LAMTOR1 isoform X1.	0.627
LOC106566062	rraga	ENSSSAP00000055582	ENSSSAP00000016806	Sodium-coupled neutral amino acid transporter 3-like isoform X3.	Ras-related GTP-binding protein A isoform X1.	0.763
LOC106566397	LAMTOR1	ENSSSAP00000035691	ENSSSAP00000043646	Ragulator complex protein LAMTOR5-like isoform X2.	Ragulator complex protein LAMTOR1-like.	0.998